Cooler file format
Names
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Cooler file format
metasource: Fairsharing.org
version: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
.cool
metasource: Fairsharing.org
version: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
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Cooler file format
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
.cool
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
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Cooler file format
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
.cool
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Cooler is a file format that implements genomically-labeled sparse 2D arrays (matrices) with identical axes in HDF5. It is also the name of the Python package that supports the format. Cooler was designed for the storage and manipulation of extremely large Hi-C datasets at any resolution, but is not limited to Hi-C data in any way. Standard file extensions are .cool for single-resolution cooler files and .mcool for files storing multiple resolutions.
Description
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Cooler is a file format that implements genomically-labeled sparse 2D arrays (matrices) with identical axes in HDF5. It is also the name of the Python package that supports the format. Cooler was designed for the storage and manipulation of extremely large Hi-C datasets at any resolution, but is not limited to Hi-C data in any way. Standard file extensions are .cool for single-resolution cooler files and .mcool for files storing multiple resolutions.
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Webpage:
https://cooler.readthedocs.io/en/latest/datamodel.htmlWebpage
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https://cooler.readthedocs.io/en/latest/datamodel.html
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence:
Name: BSD-3-Clause License (Modified BSD License) (New BSD License)Licence name
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BSD-3-Clause License (Modified BSD License) (New BSD License)
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
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https://opensource.org/licenses/BSD-3-Clause
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
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https://www.biorxiv.org/content/10.1101/557660v1
metasource: Fairsharing.org
version: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
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https://www.biorxiv.org/content/10.1101/557660v1
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags:
Tags
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chromosome
metasource: Fairsharing.org
version: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
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chromosome
metasource: Fairsharing.orgversion: FAIRsharing.org: .cool; Cooler file format; DOI: https://doi.org/10.25504/FAIRsharing.VJDEtl; Last edited: Sept. 20, 2019, 11:52 a.m.; Last accessed: Jan 03 2022 7:11 p.m.
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