Complete Arabidopsis transcriptome database
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This database contains data on 105 Arabidopsis transcriptome projects (3262 hybridized samples) in public access out of a total of 172 projects (~6440 hybridized samples).
Description
More detailed information about this field from each metasource.
This database contains data on 105 Arabidopsis transcriptome projects (3262 hybridized samples) in public access out of a total of 172 projects (~6440 hybridized samples).
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:11.178694
Webpage:
http://urgv.evry.inra.fr/CATdbWebpage
More detailed information about this field from each metasource.
http://urgv.evry.inra.fr/CATdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:11.178694
Publications:
Publications
More detailed information about this field from each metasource.
CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform
PMID: 17940091
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:11.178694
Publications
More detailed information about this field from each metasource.
CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform
PMID: 17940091
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:11.178694
-
CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform
PubMed citations: 88.
88 articles citing: CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform
Genotypic Variation of Nitrogen Use Efficiency and Amino Acid Metabolism in Barley. PMID:35185958
Transcriptome Analysis Reveals Putative Target Genes of APETALA3-3 During Early Floral Development in Nigella damascena L. PMID:34149759
BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon. PMID:33892630
A Case of Gene Fragmentation in Plant Mitochondria Fixed by the Selection of a Compensatory Restorer of Fertility-Like PPR Gene. PMID:33878189
Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks. PMID:33505431
Plant nitrogen supply affects the Botrytis cinerea infection process and modulates known and novel virulence factors. PMID:32939948
Gene expression predictions and networks in natural populations supports the omnigenic theory. PMID:32571208
The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis. PMID:32369924
The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors. PMID:32285620
Test of Arabidopsis Space Transcriptome: A Discovery Environment to Explore Multiple Plant Biology Spaceflight Experiments. PMID:32265943
A TRANSPARENT TESTA Transcriptional Module Regulates Endothelium Polarity. PMID:32117351
Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Subdomain Adjacent to the Embryo Scutellum. PMID:32086366
A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize. PMID:31891625
Mitochondrial Transcriptome Control and Intercompartment Cross-Talk During Plant Development. PMID:31200566
A stress-response-related inter-compartmental signalling pathway regulates embryonic cuticle integrity in Arabidopsis. PMID:30998684
Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction. PMID:30971226
Multi-omics Analysis Reveals Sequential Roles for ABA during Seed Maturation. PMID:30948555
Silicon supply affects the root transcriptome of Brassica napus L. PMID:30820649
The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana. PMID:30715439
Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra. PMID:30541448
Arabidopsis thaliana SPF1 and SPF2 are nuclear-located ULP2-like SUMO proteases that act downstream of SIZ1 in plant development. PMID:30053161
Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness. PMID:29855601
Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. PMID:29680877
Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo. PMID:29434651
Altered lignification in mur1-1 a mutant deficient in GDP-L-fucose synthesis with reduced RG-II cross linking. PMID:28961242
Responses to Hypoxia and Endoplasmic Reticulum Stress Discriminate the Development of Vitreous and Floury Endosperms of Conventional Maize (Zea mays) Inbred Lines. PMID:28450877
Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula. PMID:28073951
MtNF-YA1, A Central Transcriptional Regulator of Symbiotic Nodule Development, Is Also a Determinant of Medicago truncatula Susceptibility toward a Root Pathogen. PMID:27994614
The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6. PMID:27877176
The bile acid deoxycholate elicits defences in Arabidopsis and reduces bacterial infection. PMID:27085087
Genotype by watering regime interaction in cultivated tomato: lessons from linkage mapping and gene expression. PMID:26582510
GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. PMID:25392409
From dusk till dawn: the Arabidopsis thaliana sugar starving responsive network. PMID:25295047
Comparing Model Selection and Regularization Approaches to Variable Selection in Model-Based Clustering. PMID:25279246
MYB118 represses endosperm maturation in seeds of Arabidopsis. PMID:25194028
BASIC AMINO ACID CARRIER 2 gene expression modulates arginine and urea content and stress recovery in Arabidopsis leaves. PMID:25076951
Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum. PMID:25063396
Chloroplast dysfunction causes multiple defects in cell cycle progression in the Arabidopsis crumpled leaf mutant. PMID:25037213
Unexpectedly low nitrogen acquisition and absence of root architecture adaptation to nitrate supply in a Medicago truncatula highly branched root mutant. PMID:24706718
The Polyadenylation Factor Subunit CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR30: A Key Factor of Programmed Cell Death and a Regulator of Immunity in Arabidopsis. PMID:24706550
Is gene transcription involved in seed dry after-ripening? PMID:24466101
Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homoeostasis. PMID:24129639
The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase. PMID:23964284
Characterization of the early events leading to totipotency in an Arabidopsis protoplast liquid culture by temporal transcript profiling. PMID:23903317
Uridylation prevents 3' trimming of oligoadenylated mRNAs. PMID:23748567
Nuclear retention of the transcription factor NLP7 orchestrates the early response to nitrate in plants. PMID:23591880
Light-induced acclimation of the Arabidopsis chlorina1 mutant to singlet oxygen. PMID:23590883
Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. PMID:23166598
Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana. PMID:23134674
A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments. PMID:23056196
Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism. PMID:23054470
Live imaging of DORNRÖSCHEN and DORNRÖSCHEN-LIKE promoter activity reveals dynamic changes in cell identity at the microcallus surface of Arabidopsis embryonic suspensions. PMID:23011125
Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis. PMID:22829781
Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures. PMID:22453064
Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants. PMID:22431637
Mutations in the Arabidopsis homolog of LST8/GβL, a partner of the target of Rapamycin kinase, impair plant growth, flowering, and metabolic adaptation to long days. PMID:22307851
Genomic approach to study floral development genes in Rosa sp. PMID:22194838
RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.). PMID:22136458
Arabidopsis roots and shoots show distinct temporal adaptation patterns toward nitrogen starvation. PMID:21900481
GeBP/GPL transcription factors regulate a subset of CPR5-dependent processes. PMID:21875893
The effect of carnitine on Arabidopsis development and recovery in salt stress conditions. PMID:21853252
Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors. PMID:21738689
The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins. PMID:21695268
Targeted mRNA oxidation regulates sunflower seed dormancy alleviation during dry after-ripening. PMID:21642546
Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis. PMID:21589905
Interaction between the bHLH transcription factor FIT and ETHYLENE INSENSITIVE3/ETHYLENE INSENSITIVE3-LIKE1 reveals molecular linkage between the regulation of iron acquisition and ethylene signaling in Arabidopsis. PMID:21586684
DELLAs regulate chlorophyll and carotenoid biosynthesis to prevent photooxidative damage during seedling deetiolation in Arabidopsis. PMID:21571951
Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression. PMID:21493812
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. PMID:21487388
GABA accumulation causes cell elongation defects and a decrease in expression of genes encoding secreted and cell wall-related proteins in Arabidopsis thaliana. PMID:21471118
Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems. PMID:21447792
Exploration of plant genomes in the FLAGdb++ environment. PMID:21447150
Geminiviruses subvert ubiquitination by altering CSN-mediated derubylation of SCF E3 ligase complexes and inhibit jasmonate signaling in Arabidopsis thaliana. PMID:21441437
Polycomb repressive complex 2 controls the embryo-to-seedling phase transition. PMID:21423668
Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PMID:21304947
GreenPhylDB v2.0: comparative and functional genomics in plants. PMID:20864446
Expression of the Beet necrotic yellow vein virus p25 protein induces hormonal changes and a root branching phenotype in Arabidopsis thaliana. PMID:20602166
Arabidopsis GLUTATHIONE REDUCTASE1 plays a crucial role in leaf responses to intracellular hydrogen peroxide and in ensuring appropriate gene expression through both salicylic acid and jasmonic acid signaling pathways. PMID:20488891
The RNA binding protein Tudor-SN is essential for stress tolerance and stabilizes levels of stress-responsive mRNAs encoding secreted proteins in Arabidopsis. PMID:20484005
TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation. PMID:20222994
Screening and quantification of the expression of antibiotic resistance genes in Acinetobacter baumannii with a microarray. PMID:19884373
Cell wall biogenesis of Arabidopsis thaliana elongating cells: transcriptomics complements proteomics. PMID:19878582
A major role of the MEKK1-MKK1/2-MPK4 pathway in ROS signalling. PMID:19529823
Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. PMID:19168643
The Arabidopsis abscisic acid catabolic gene CYP707A2 plays a key role in nitrate control of seed dormancy. PMID:19074630
Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis. PMID:18950478
A genome-wide and metabolic analysis determined the adaptive response of Arabidopsis cells to folate depletion induced by methotrexate. PMID:18931140
Unique genes in plants: specificities and conserved features throughout evolution. PMID:18847470
Tags:
gene and protein families plant biology
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