Cell Line Integrated Molecular Authentication Database
Names
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Cell Line Integrated Molecular Authentication Database
metasource: Fairsharing.org
version: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
CLIMA 2
metasource: Fairsharing.org
version: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
clima_2
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
Names
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Cell Line Integrated Molecular Authentication Database
metasource: Fairsharing.orgversion: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
CLIMA 2
metasource: Fairsharing.orgversion: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
clima_2
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:37.561158
Names
More detailed information about this field from each metasource.
Cell Line Integrated Molecular Authentication Database
metasource: Fairsharing.orgversion: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
CLIMA 2
metasource: Fairsharing.orgversion: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
clima_2
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:37.561158
CLIMA 2 is the result of an integration effort aimed at including all certified STR profiles of human cell lines in a unique database. The contents of the database are dynamically summarized (i.e., they are always up-to-date) in a table in the home page. CLIMA can be used to identify researcher's cell lines. Moreover, it can be searched either by name or by locus. The identification of a cell line is performed according to the standard ANSI/ATCC ASN-0002-2011 on "Authentication of Human Cell Lines: Standardization of STR Profiling".
Description
More detailed information about this field from each metasource.
CLIMA 2 is the result of an integration effort aimed at including all certified STR profiles of human cell lines in a unique database. The contents of the database are dynamically summarized (i.e., they are always up-to-date) in a table in the home page. CLIMA can be used to identify researcher's cell lines. Moreover, it can be searched either by name or by locus. The identification of a cell line is performed according to the standard ANSI/ATCC ASN-0002-2011 on "Authentication of Human Cell Lines: Standardization of STR Profiling".
metasource: Fairsharing.orgversion: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Cell Line Integrated Molecular Authentication database and Identification tool. It represents a reference for validated molecular authentication of human cell lines independently from the platforms used.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:37.561158
Webpage:
http://bioinformatics.hsanmartino.it/clima2/Webpage
More detailed information about this field from each metasource.
http://bioinformatics.hsanmartino.it/clima2/
metasource: Fairsharing.orgversion: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
Publications:
Publications
More detailed information about this field from each metasource.
Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines
PMID: 18927105
metasource: Fairsharing.org
version: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
Publications
More detailed information about this field from each metasource.
Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines
PMID: 18927105
metasource: Fairsharing.org
version: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
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Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines
PubMed citations: 75.
75 articles citing: Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines
Epigenetic and transcriptome responsiveness to ER modulation by tissue selective estrogen complexes in breast epithelial and breast cancer cells. PMID:35862394
Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining. PMID:35454109
Maximal Activation of Apoptosis Signaling by Cotargeting Antiapoptotic Proteins in BH3 Mimetic-Resistant AML and AML Stem Cells. PMID:35364607
MFUM-BrTNBC-1, a Newly Established Patient-Derived Triple-Negative Breast Cancer Cell Line: Molecular Characterisation, Genetic Stability, and Comprehensive Comparison with Commercial Breast Cancer Cell Lines. PMID:35011679
Navigating Multi-Scale Cancer Systems Biology Towards Model-Driven Clinical Oncology and Its Applications in Personalized Therapeutics. PMID:34900668
A conserved expression signature predicts growth rate and reveals cell & lineage-specific differences. PMID:34762642
Rapid viscoelastic changes are a hallmark of early leukocyte activation. PMID:33730552
Transcriptional activators YAP/TAZ and AXL orchestrate dedifferentiation, cell fate, and metastasis in human osteosarcoma. PMID:33408328
Short tandem repeat profiling for the authentication of cancer stem-like cells. PMID:33128777
Combinatorial Inhibition of Focal Adhesion Kinase and BCL-2 Enhances Antileukemia Activity of Venetoclax in Acute Myeloid Leukemia. PMID:32404407
Blocking c-Met and EGFR reverses acquired resistance of PARP inhibitors in triple-negative breast cancer. PMID:32195033
Traditional and Advanced Cell Cultures in Hematopoietic Stem Cell Studies. PMID:31842488
Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy. PMID:31725857
Intact-Cell MALDI-ToF Mass Spectrometry for the Authentication of Drug-Adapted Cancer Cell Lines. PMID:31581737
The phosphatase PPM1A inhibits triple negative breast cancer growth by blocking cell cycle progression. PMID:31372497
The cell line ontology-based representation, integration and analysis of cell lines used in China. PMID:31272367
The Effect of P-Glycoprotein (P-gp), Nuclear Factor-Kappa B (Nf-κb), and Aldehyde Dehydrogenase-1 (ALDH-1) Expression on Metastases, Recurrence and Survival in Advanced Breast Cancer Patients. PMID:31128056
H2O2 induces nuclear transport of the receptor tyrosine kinase c-MET in breast cancer cells via a membrane-bound retrograde trafficking mechanism. PMID:30962283
Synergism of PARP inhibitor fluzoparib (HS10160) and MET inhibitor HS10241 in breast and ovarian cancer cells. PMID:30949414
An ARC-Regulated IL1β/Cox-2/PGE2/β-Catenin/ARC Circuit Controls Leukemia-Microenvironment Interactions and Confers Drug Resistance in AML. PMID:30674535
Establishment of five immortalized human ovarian surface epithelial cell lines via SV40 T antigen or HPV E6/E7 expression. PMID:30296284
Analysis of Racial/Ethnic Representation in Select Basic and Applied Cancer Research Studies. PMID:30228363
Telmisartan Protects a Microglia Cell Line from LPS Injury Beyond AT1 Receptor Blockade or PPARγ Activation. PMID:30105672
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
FAM35A associates with REV7 and modulates DNA damage responses of normal and BRCA1-defective cells. PMID:29789392
STT3-dependent PD-L1 accumulation on cancer stem cells promotes immune evasion. PMID:29765039
ARID1A deficiency promotes mutability and potentiates therapeutic antitumor immunity unleashed by immune checkpoint blockade. PMID:29736026
GEMiCCL: mining genotype and expression data of cancer cell lines with elaborate visualization. PMID:29726944
Disruption of Wnt/β-Catenin Exerts Antileukemia Activity and Synergizes with FLT3 Inhibition in FLT3-Mutant Acute Myeloid Leukemia. PMID:29463558
Isolation and characterization of the primary epithelial breast cancer cells and the adjacent normal epithelial cells from Iranian women's breast cancer tumors. PMID:29380298
Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses. PMID:29322930
Focal Adhesion Kinase as a Potential Target in AML and MDS. PMID:28270436
Cell lines authentication and mycoplasma detection as minimun quality control of cell lines in biobanking. PMID:28255773
Are your results valid? Cellular authentication a need from the past, an emergency on the present. PMID:28127703
Modeling Stroma-Induced Drug Resistance in a Tissue-Engineered Tumor Model of Ewing Sarcoma. PMID:27923328
Analysis of phosphatases in ER-negative breast cancers identifies DUSP4 as a critical regulator of growth and invasion. PMID:27393618
Redirecting T-Cell Specificity to EGFR Using mRNA to Self-limit Expression of Chimeric Antigen Receptor. PMID:27163741
Limited but durable changes to cellular gene expression in a model of latent adenovirus infection are reflected in childhood leukemic cell lines. PMID:27085068
Oncofetal Epigenetic Bivalency in Breast Cancer Cells: H3K4 and H3K27 Tri-Methylation as a Biomarker for Phenotypic Plasticity. PMID:26916849
The SOX11 transcription factor is a critical regulator of basal-like breast cancer growth, invasion, and basal-like gene expression. PMID:26894864
MicroRNA-378-mediated suppression of Runx1 alleviates the aggressive phenotype of triple-negative MDA-MB-231 human breast cancer cells. PMID:26749280
Characterization of swine testicular cell line as immature porcine Sertoli cell line. PMID:26744029
Cell line name recognition in support of the identification of synthetic lethality in cancer from text. PMID:26428294
Tuning Sensitivity of CAR to EGFR Density Limits Recognition of Normal Tissue While Maintaining Potent Antitumor Activity. PMID:26330164
Flow perfusion effects on three-dimensional culture and drug sensitivity of Ewing sarcoma. PMID:26240353
Platelet-activating factor induces cell cycle arrest and disrupts the DNA damage response in mast cells. PMID:25950475
A resource for cell line authentication, annotation and quality control. PMID:25877200
Targeting of Runx2 by miR-135 and miR-203 Impairs Progression of Breast Cancer and Metastatic Bone Disease. PMID:25634212
REV7 is essential for DNA damage tolerance via two REV3L binding sites in mammalian DNA polymerase ζ. PMID:25567983
Essential role of the cancer stem/progenitor cell marker nucleostemin for indole-3-carbinol anti-proliferative responsiveness in human breast cancer cells. PMID:25209720
Epigenetic silencing of the non-coding RNA nc886 provokes oncogenes during human esophageal tumorigenesis. PMID:25004084
Definition of PKC-α, CDK6, and MET as therapeutic targets in triple-negative breast cancer. PMID:24970481
Clinical biospecimens: reference materials, certified for nominal properties? PMID:24749878
Acetate supplementation induces growth arrest of NG2/PDGFRα-positive oligodendroglioma-derived tumor-initiating cells. PMID:24278309
HINCUTs in cancer: hypoxia-induced noncoding ultraconserved transcripts. PMID:24037088
A renewable tissue resource of phenotypically stable, biologically and ethnically diverse, patient-derived human breast cancer xenograft models. PMID:23737486
The identification and characterization of breast cancer CTCs competent for brain metastasis. PMID:23576814
CellLineMiner: a knowledge portal for human cell lines. PMID:23251048
On the ontology based representation of cell lines. PMID:23144907
Comparative analysis of dynamic cell viability, migration and invasion assessments by novel real-time technology and classic endpoint assays. PMID:23094027
TPX: Biomedical literature search made easy. PMID:22829734
Abortive autophagy induces endoplasmic reticulum stress and cell death in cancer cells. PMID:22745748
Cell-culture Database: Literature-based reference tool for human and mammalian experimentallybased cell culture applications. PMID:22493527
Detection algorithm for the validation of human cell lines. PMID:22419365
Androgen regulation of 5α-reductase isoenzymes in prostate cancer: implications for prostate cancer prevention. PMID:22194926
Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection. PMID:22151087
IL-2 regulates the expression of the tumor suppressor IL-24 in melanoma cells. PMID:22027907
Association of activated c-Met with NRAS-mutated human melanomas. PMID:22020736
ZNF668 functions as a tumor suppressor by regulating p53 stability and function in breast cancer. PMID:21852383
IGRhCellID: integrated genomic resources of human cell lines for identification. PMID:21051335
TRIP Database: a manually curated database of protein-protein interactions for mammalian TRP channels. PMID:20851834
Responses in mantle cell lymphoma cells to SNS-032 depend on the biological context of each cell line. PMID:20663900
Identification of optimal drug combinations targeting cellular networks: integrating phospho-proteomics and computational network analysis. PMID:20643779
IBWS: IST Bioinformatics Web Services. PMID:20484374
Cell line misidentification: the beginning of the end. PMID:20448633
Tags:
Tags
More detailed information about this field from each metasource.
cell line
metasource: Fairsharing.org
version: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
short tandem repeat variation
metasource: Fairsharing.org
version: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cell culture collection
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
data governance
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
human biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:37.561158
Tags
More detailed information about this field from each metasource.
cell line
metasource: Fairsharing.orgversion: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
short tandem repeat variation
metasource: Fairsharing.orgversion: FAIRsharing.org: CLIMA 2; Cell Line Integrated Molecular Authentication Database; DOI: https://doi.org/10.25504/FAIRsharing.qq9jf4; Last edited: March 4, 2019, 12:45 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cell culture collection
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:37.561158
data governance
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:37.561158
human biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:37.561158
cell line short tandem repeat variation cell culture collection data governance human
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