A Gold Path format
Names
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A Gold Path format
metasource: Fairsharing.org
version: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
AGP format
metasource: Fairsharing.org
version: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Names
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A Gold Path format
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
AGP format
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Names
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A Gold Path format
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
AGP format
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
AGP format describes the assembly of a larger sequence object from smaller objects. The large object can be a contig, a scaffold (supercontig), or a chromosome. Each line (row) of the AGP file describes a different piece of the object, and has the column entries defined below. Extended comments follow. It does not serve for either a description of how sequence reads were assembled, or a description of the alignments between components used to construct a larger object. Not all of the information in proprietary assembly files can be represented in the AGP format. It is also not for recording the spans of features like repeats or genes.
Description
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AGP format describes the assembly of a larger sequence object from smaller objects. The large object can be a contig, a scaffold (supercontig), or a chromosome. Each line (row) of the AGP file describes a different piece of the object, and has the column entries defined below. Extended comments follow. It does not serve for either a description of how sequence reads were assembled, or a description of the alignments between components used to construct a larger object. Not all of the information in proprietary assembly files can be represented in the AGP format. It is also not for recording the spans of features like repeats or genes.
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Webpage:
https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/Webpage
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https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence:
Name: NCBI Website and Data Usage Policies and DisclaimersLicence name
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NCBI Website and Data Usage Policies and Disclaimers
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence URL
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https://www.ncbi.nlm.nih.gov/home/about/policies/
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags:
Tags
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genomic assembly
metasource: Fairsharing.org
version: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
genomic assembly
metasource: Fairsharing.orgversion: FAIRsharing.org: AGP format; A Gold Path format; DOI: https://doi.org/10.25504/FAIRsharing.mg1mdc; Last edited: Feb. 27, 2020, 11:32 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
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